CDS

Accession Number TCMCG057C18393
gbkey CDS
Protein Id XP_018477115.1
Location join(21524803..21525094,21525222..21525258,21525681..21525739,21525882..21525963,21526049..21526169,21526254..21526295,21526370..21526903,21526984..21527091,21527269..21527466,21527580..21527612)
Gene LOC108848290
GeneID 108848290
Organism Raphanus sativus

Protein

Length 501aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018621613.1
Definition PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X3 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category O
Description Zinc finger, C3HC4 type (RING finger)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10695        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000151        [VIEW IN EMBL-EBI]
GO:0000152        [VIEW IN EMBL-EBI]
GO:0001709        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010073        [VIEW IN EMBL-EBI]
GO:0010074        [VIEW IN EMBL-EBI]
GO:0010076        [VIEW IN EMBL-EBI]
GO:0010077        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010492        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019827        [VIEW IN EMBL-EBI]
GO:0030154        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031519        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0035102        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045165        [VIEW IN EMBL-EBI]
GO:0045814        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0048507        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0098727        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTGTGAAGAAGAGCTTCTCGGCGGCTGAGATTCCGGATGAGCAAGGGGATGATGGTAGAGACCAACAACAACAACAACTCCACCGATTTGACCCGGAAGCTGAAGAGAACGAACCAGAGGATCTACAGGAGGAGGAGACGGTGGTTGAGAAGAAAGACGAAGAAGAAGTGAAACGCGACGAAGCGGAGGAGGAGGAGGAAGTAGTAGAAGAAGAAGAAGATAAGGAAGATGGTGATGAAGATGCAGAAGAGGAGGAGGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGATTCTAAGGAGAAAAGTCCATCAGGAGACAAATCAGAGTTTATGGAAATTGATCTAGGGGAAATCCGTAAAGACGTCCAGTGTCCTATTTGCTTAGGAATTATAAAGAAAACAAGGACTGTGATGGAATGCCTGCACCGCTTCTGCCGAGAATGTATTGATAAGTCAATGAGATTAGGGAACAACGAATGTCCTGCTTGCAGGAAACATTGTGCAAGCCGTCGTTCTCTTAGAGACGACCCAAAGTTTGATGCTCTTATTGCAGCTTTGTTCACTAATATCGACAGCTATGAGCAAGAGGAATTCGCTTTTCACGAAGATGACAAGGCTCGTAACAAGCAGATTCAAGCATCTATAGCTGAAATATCACAAAGACAATCAGAGGCTCTTGTGAAAAGAAAATCTTTTGGTAAAGAGGCTGCAGTTTTAATGAGATCACAGCGTAGGAGGAGAAGGAACTGCAGAAACGCAGTTGACGAGGATGATAATAATAATAATGAAGATAACATCAACAACAACGGAGGAGGAGATTCGTCTTCAGATGAGCGTGGTGCAGAAGTCCGGCTTAGAAAACGTAGGAAACAACGGTCTGCAAGTCGTTCAACACCGCACCCTTCTTCTTCAGGTGCAAACAACAACAACAACGGTGGTAACTGCGGAGATAACGACACAGAAGTGTATCGAGACAAAGGGATATCCCCCGGGCTTGTGTGGAATCCGGAGATGCTGGCTTGGGGAAGAAGTGCTACAAGGAGTAACCCAAGGCATGAGAATAATACACAGGGAGGTGGTAGTAGTAGTAAGAGTTTGAGGAATGCCCGTGTTAATAAACTTGTGGAATATCTACGCAGCAACGTATGTGGAAACAATGTTGAGGTGGATATTCATCTCAAGCTTGTCTCACTAGATGCCAAATGTGTACCAGATATACCACAGCCATATCTTCGTTGCAGAGCCACCTTGCTTGTGAAACAGCTCCGTGAATTTGTGGCACTTCAGACGCATTTGAAGACTGAAGAGGTTGAACTGTTGGTAACAAGAGGAGAAGATAAGGGAATAGAGACTCTTCCTGTAGTGACTTCAGCTTCAGCATCCAAAGGTGAGCTGCAAAGTCTGGAAGACGATGAAACAACATTGTCAAGGCTCAAAACCGATTTCAGTTCAAGCCATGAACAACATATGACCATATCTTACAGGCAGAAGCAAACCGAGTGA
Protein:  
MSVKKSFSAAEIPDEQGDDGRDQQQQQLHRFDPEAEENEPEDLQEEETVVEKKDEEEVKRDEAEEEEEVVEEEEDKEDGDEDAEEEEEDEEEEEEEEDSKEKSPSGDKSEFMEIDLGEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRKHCASRRSLRDDPKFDALIAALFTNIDSYEQEEFAFHEDDKARNKQIQASIAEISQRQSEALVKRKSFGKEAAVLMRSQRRRRRNCRNAVDEDDNNNNEDNINNNGGGDSSSDERGAEVRLRKRRKQRSASRSTPHPSSSGANNNNNGGNCGDNDTEVYRDKGISPGLVWNPEMLAWGRSATRSNPRHENNTQGGGSSSKSLRNARVNKLVEYLRSNVCGNNVEVDIHLKLVSLDAKCVPDIPQPYLRCRATLLVKQLREFVALQTHLKTEEVELLVTRGEDKGIETLPVVTSASASKGELQSLEDDETTLSRLKTDFSSSHEQHMTISYRQKQTE